Package: ConfoundingExplorer
Type: Package
Title: Confounding Explorer
Version: 0.5.1
Date: 2024-03-24
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", 
    comment = c(ORCID = "0000-0003-3833-2169")))
Description: This package provides a simple interactive application for
        investigating the effect of confounding between a signal of
        interest and a batch effect. It uses simulated data with
        user-specified effect sizes for both batch and condition
        effects. The user can also specify the number of samples in
        each condition and batch, and thereby the degree of
        confounding.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: shiny, ggplot2, iSEE, iCOBRA, cowplot, shinydashboard,
        ComplexHeatmap, shinyMatrix, stats, grDevices, shinyjs,
        rintrojs, limma, methods, tidyr, dplyr, tibble
RoxygenNote: 7.3.2
biocViews: Regression, ExperimentalDesign, MultipleComparison,
        BatchEffect
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev perl zlib1g-dev
Repository: https://csoneson.r-universe.dev
Date/Publication: 2026-06-12 18:05:36 UTC
RemoteUrl: https://github.com/csoneson/ConfoundingExplorer
RemoteRef: HEAD
RemoteSha: d1b88be49b25d92d6fcedda79538c7b61cc24364
NeedsCompilation: no
Packaged: 2026-06-12 20:06:22 UTC; root
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>