Package: ConfoundingExplorer 0.5.1
ConfoundingExplorer: Confounding Explorer
This package provides a simple interactive application for investigating the effect of confounding between a signal of interest and a batch effect. It uses simulated data with user-specified effect sizes for both batch and condition effects. The user can also specify the number of samples in each condition and batch, and thereby the degree of confounding.
Authors:
ConfoundingExplorer_0.5.1.tar.gz
ConfoundingExplorer_0.5.1.zip(r-4.7)ConfoundingExplorer_0.5.1.zip(r-4.6)ConfoundingExplorer_0.5.1.zip(r-4.5)
ConfoundingExplorer_0.5.1.tgz(r-4.6-any)ConfoundingExplorer_0.5.1.tgz(r-4.5-any)
ConfoundingExplorer_0.5.1.tar.gz(r-4.7-any)ConfoundingExplorer_0.5.1.tar.gz(r-4.6-any)
ConfoundingExplorer_0.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ConfoundingExplorer/json (API)
| # Install 'ConfoundingExplorer' in R: |
| install.packages('ConfoundingExplorer', repos = c('https://csoneson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/csoneson/confoundingexplorer/issues
regressionexperimentaldesignmultiplecomparisonbatcheffect
Last updated from:ddb0b35194. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 260 | ||
| source / vignettes | OK | 236 | ||
| linux-release-x86_64 | OK | 296 | ||
| macos-release-arm64 | OK | 237 | ||
| macos-oldrel-arm64 | OK | 255 | ||
| windows-devel | OK | 243 | ||
| windows-release | OK | 231 | ||
| windows-oldrel | OK | 329 | ||
| wasm-release | OK | 148 |
Exports:ConfoundingExplorer
Dependencies:abindbase64encBiobaseBiocGenericsbitopsbslibcachemcaToolscirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkDelayedArraydigestdoParalleldplyrDTevaluatefarverfastmapfontawesomeforeachfsgenericsGenomicRangesGetoptLongggplot2ggrepelGlobalOptionsgluegplotsgtablegtoolshighrhtmltoolshtmlwidgetshttpuviCOBRAigraphIRangesiSEEisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmalistviewermagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUInlmeotelpatchworkpillarpkgconfigplyrpngpromisesprompterpurrrR6rappdirsRColorBrewerRcppreshape2rintrojsrjsonrlangrmarkdownROCRS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinyAceshinydashboardshinyjsshinyMatrixshinyWidgetsSimpleUpsetSingleCellExperimentsourcetoolsSparseArraystatmodstringistringrSummarizedExperimenttibbletidyrtidyselecttinytexutf8vctrsviporviridisLitewithrxfunxtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Confounding explorer | ConfoundingExplorer |
