Package: ConfoundingExplorer 0.5.1

ConfoundingExplorer: Confounding Explorer

This package provides a simple interactive application for investigating the effect of confounding between a signal of interest and a batch effect. It uses simulated data with user-specified effect sizes for both batch and condition effects. The user can also specify the number of samples in each condition and batch, and thereby the degree of confounding.

Authors:Charlotte Soneson [aut, cre]

ConfoundingExplorer_0.5.1.tar.gz
ConfoundingExplorer_0.5.1.zip(r-4.7)ConfoundingExplorer_0.5.1.zip(r-4.6)ConfoundingExplorer_0.5.1.zip(r-4.5)
ConfoundingExplorer_0.5.1.tgz(r-4.6-any)ConfoundingExplorer_0.5.1.tgz(r-4.5-any)
ConfoundingExplorer_0.5.1.tar.gz(r-4.7-any)ConfoundingExplorer_0.5.1.tar.gz(r-4.6-any)
ConfoundingExplorer_0.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
ConfoundingExplorer/json (API)

# Install 'ConfoundingExplorer' in R:
install.packages('ConfoundingExplorer', repos = c('https://csoneson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/csoneson/confoundingexplorer/issues

On CRAN:

Conda:

regressionexperimentaldesignmultiplecomparisonbatcheffect

2.00 score 2 stars 4 scripts 1 exports 125 dependencies

Last updated from:ddb0b35194. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK260
source / vignettesOK236
linux-release-x86_64OK296
macos-release-arm64OK237
macos-oldrel-arm64OK255
windows-develOK243
windows-releaseOK231
windows-oldrelOK329
wasm-releaseOK148

Exports:ConfoundingExplorer

Dependencies:abindbase64encBiobaseBiocGenericsbitopsbslibcachemcaToolscirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkDelayedArraydigestdoParalleldplyrDTevaluatefarverfastmapfontawesomeforeachfsgenericsGenomicRangesGetoptLongggplot2ggrepelGlobalOptionsgluegplotsgtablegtoolshighrhtmltoolshtmlwidgetshttpuviCOBRAigraphIRangesiSEEisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmalistviewermagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUInlmeotelpatchworkpillarpkgconfigplyrpngpromisesprompterpurrrR6rappdirsRColorBrewerRcppreshape2rintrojsrjsonrlangrmarkdownROCRS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinyAceshinydashboardshinyjsshinyMatrixshinyWidgetsSimpleUpsetSingleCellExperimentsourcetoolsSparseArraystatmodstringistringrSummarizedExperimenttibbletidyrtidyselecttinytexutf8vctrsviporviridisLitewithrxfunxtableXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
Confounding explorerConfoundingExplorer