Package: ConfoundingExplorer 0.5.1

ConfoundingExplorer: Confounding Explorer

This package provides a simple interactive application for investigating the effect of confounding between a signal of interest and a batch effect. It uses simulated data with user-specified effect sizes for both batch and condition effects. The user can also specify the number of samples in each condition and batch, and thereby the degree of confounding.

Authors:Charlotte Soneson [aut, cre]

ConfoundingExplorer_0.5.1.tar.gz
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ConfoundingExplorer.pdf |ConfoundingExplorer.html
ConfoundingExplorer/json (API)

# Install 'ConfoundingExplorer' in R:
install.packages('ConfoundingExplorer', repos = c('https://csoneson.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/csoneson/confoundingexplorer/issues

On CRAN:

1 exports 2 stars 0.61 score 137 dependencies 3 scripts

Last updated 2 months agofrom:2bae33e1e0. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 02 2024
R-4.5-winOKSep 02 2024
R-4.5-linuxOKSep 02 2024
R-4.4-winOKSep 02 2024
R-4.4-macOKSep 02 2024
R-4.3-winOKAug 13 2024
R-4.3-macOKAug 13 2024

Exports:ConfoundingExplorer

Dependencies:abindanytimeaskpassbase64encBHBiobaseBiocGenericsbitopsbslibcachemcaToolscirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkcurlDelayedArraydigestdoParalleldplyrDTevaluatefansifarverfastmapfontawesomeforeachfsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2ggrepelGlobalOptionsgluegplotsgridExtragtablegtoolshighrhtmltoolshtmlwidgetshttpuvhttriCOBRAigraphIRangesiSEEisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmalistviewermagrittrmarkdownMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslpillarpkgconfigplyrpngpromisespurrrR6rappdirsRColorBrewerRcppreshape2rintrojsrjsonrlangrmarkdownROCRS4ArraysS4VectorssassscalesshapeshinyshinyAceshinyBSshinydashboardshinyjsshinyMatrixshinyWidgetsSingleCellExperimentsourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsUpSetRutf8vctrsviporviridisLitewithrxfunxtableXVectoryamlzlibbioc

Readme and manuals

Help Manual

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