Incorporating sketching into a typical single-cell analysis workflowUpdated 21 days ago

Charlotte Soneson

Rendered from sketching_workflows.Rmd in sketchR 1.9.1.
Subsampling single-cell data sets with sketchRUpdated 21 days ago

Charlotte Soneson

Rendered from sketchR.Rmd in sketchR 1.9.1.
iCOBRA User GuideUpdated 6 months ago

Charlotte Soneson

Rendered from iCOBRA.Rmd in iCOBRA 1.41.1.
bettrUpdated 7 months ago

Charlotte Soneson & Federico Marini

Rendered from bettr.Rmd in bettr 1.9.0.
Server Mode Guide for bettrUpdated 7 months ago

bettr package authors

Rendered from server-mode.Rmd in bettr 1.9.0.
Multiplexed assays of variant effect analysis with mutscanUpdated 10 months ago

Charlotte Soneson and Michael Stadler

Rendered from mutscan.Rmd in mutscan 1.3.0.
alevinQCUpdated 2 years ago

Charlotte Soneson

Rendered from alevinqc.Rmd in alevinQC 1.29.0.
Finding optimal resolution of hierarchical hypotheses with treeclimbRUpdated 2 years ago

Charlotte Soneson and Ruizhu Huang

Rendered from treeclimbR.Rmd in treeclimbR 1.9.0.
Interactive exploration of design matrices with ExploreModelMatrixUpdated 2 years ago

Charlotte Soneson, Federico Marini, Michael I Love, Florian Geier and Michael B Stadler

Rendered from ExploreModelMatrix.Rmd in ExploreModelMatrix 1.25.0.
Including inter-species measurements in differential expression analysis of RNAseq data with the compcodeR packageUpdated 4 years ago

Paul Bastide & Mélina Gallopin

Rendered from phylocompcodeR.Rmd in compcodeR 1.49.0.
Comparing methods for differential expression analysis of RNAseq data with the compcodeR packageUpdated 6 years ago

Charlotte Soneson

Rendered from compcodeR.Rmd in compcodeR 1.49.0.
Deploying ExploreModelMatrix on a Shiny ServerUpdated 6 years ago

Charlotte Soneson, Federico Marini, Michael I Love, Florian Geier and Michael B Stadler

Rendered from EMMdeploy.Rmd in ExploreModelMatrix 1.25.0.
countsimQC - Comparing characteristic features across count data setsUpdated 6 years ago

Charlotte Soneson

Rendered from countsimQC.Rmd in countsimQC 1.31.0.
drevalUpdated 7 years ago

Charlotte Soneson

Rendered from dreval.Rmd in dreval 0.1.6.
Aligning reads with Rhisat2Updated 7 years ago

Charlotte Soneson

Rendered from Rhisat2.Rmd in Rhisat2 1.29.0.